Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQFLGEFLGTFILVLLGDGVVAGNVLSKTKEEGTGWTAIVFGWGIACTVAVYVSGLFSPAHLNPAVTLAMASIGAISWGQVIPFIIAQMLGAMVAATILWLHYYPHWKETKDSGLILASFSTGPAIRHTPSNLLGEIIGTAILVITIMAIGPSKVAAGLGPI----IVGIVIFAVGFSLGPTTGYAINPARDLGPRLMHAILPIENKGDSDWSYAWIPVVGPIIGGVLGAILYNIALTLI
3C02 Chain:A ((10-239))
VREFIGEFLGTFVLMFLGEGATAN--FHTTGLSGD-WYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWET-SRNPSISLTGA-FFNELILTGILLLVILVVVDENICGKFHILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICPL
General information:
TITO was launched using:
RESULT:
Template:
3C02.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -176174 for 1990 contacts (-88.5/contact) +
2D Compatibility (PS) -23038 + (NN) -3295 + (LL) -8
1D Compatibility (HY) -29600 + (ID) 3700
Total energy: -235815.0 ( -118.50 by residue)
QMean score : 0.262
(partial model without unconserved sides chains):
PDB file :
Tito_3C02.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C02-query.scw
PDB file :
Tito_Scwrl_3C02.pdb
: