Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKISEEEVRHVANLSKLRFSDQETKEFASSLSKIVDMIELLNEVDTEGVPVTTTMADRKTVMREDIAQPGNNRDDLFKNVPQHQDYYIKVPAILEDGGDA
2DF4 Chain:C ((3-95))
-KVTREEVEHIANLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDKAIKGIPQELALKNAKETEDGQFKVPTIMNEEDA-
General information:
TITO was launched using:
RESULT:
Template:
2DF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9033 for 386 contacts (-23.4/contact) +
2D Compatibility (PS) -9881 + (NN) -3971 + (LL) 312
1D Compatibility (HY) -4000 + (ID) 1850
Total energy: -28423.0 ( -73.63 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_2DF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DF4-query.scw
PDB file :
Tito_Scwrl_2DF4.pdb
: