Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKILAACGAGVNSSHQIKDAIETQLGDRGYNVHCDAVMVKDITEEMVNKYDIFTPIAKTDLGFNVPIPVVEAGPILYRIPVMSEPVFTALEQVIKEHNLS
1JMA Chain:A ((119-184))
-----------------------------SYNKSLGACPIR--TQPRWNYYDSFSAVSEDNLGFLMHAPAFETAGTYLRLVKIND--WTEITQFILEHRAK
General information:
TITO was launched using:
RESULT:
Template:
1JMA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10599 for 281 contacts (-37.7/contact) +
2D Compatibility (PS) -6886 + (NN) 1329 + (LL) 2244
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -19662.0 ( -69.97 by residue)
QMean score : 0.035
(partial model without unconserved sides chains):
PDB file :
Tito_1JMA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JMA-query.scw
PDB file :
Tito_Scwrl_1JMA.pdb
: