Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLNDRLKIEEMEEKYDSFKPRINALVEAIDDFQKHYEDYVKLREFYGSEDWFRLSEQTENNLKCGVLSEDQLFDFIGEHNELVGQFLDMSSQMYRHL
4MER Chain:A ((5-98))
----DQLIVEKMEQTYEAFSPKLANLIEALDAFKEHYEEYATLRNFYSSDEWFRLANQP--DIPCGVLSEDLLFDMIGDHNQLLADILDLAPIMYKHM
General information:
TITO was launched using:
RESULT:
Template:
4MER.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11505 for 412 contacts (-27.9/contact) +
2D Compatibility (PS) -9944 + (NN) -3523 + (LL) 248
1D Compatibility (HY) -13200 + (ID) 2350
Total energy: -40274.0 ( -97.75 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_4MER.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MER-query.scw
PDB file :
Tito_Scwrl_4MER.pdb
: