Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTENFWRELPRPFFVLAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNS----------ESYCHPDGKDSVRGRLTFTEDEQPIVAHIWGDKPENFRKMSIGMAELGFKGLDINMGCPVPNVAGNGKGSGLICRPAV---AAELIQAAKAGGLPVSVKTRLGYTDVDEWREWLTHILKQDIANLSIHLRTRAEMSKVD-AHWELIPEIKKLRDEVAPDTLLTINGDIPDRQTGLKLAEQYGVDGIMIGRGIFTNPFAFEKEPKEHSSKELLDLLRLHLDLHDEYSKEEARPYKPLPRFFKIYLRGFRGASELRNQCMNTKSTDEVRALLDDFERKYLDGIE
3W9Z Chain:A ((3-242))-------------VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRIC-PELQNASR-----TPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGC-------------LLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQ-----RLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP--------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 3W9Z.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1147 -117996 -102.87 -584.14
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.69

3D Compatibility (PKB) : -102.87
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.499

(partial model without unconserved sides chains):
PDB file : Tito_3W9Z.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3W9Z-query.scw
PDB file : Tito_Scwrl_3W9Z.pdb: