Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDGKRAVTSAVLVVLGACLALWLSGCSSPKPDAEEQGVPVSPTASDPALLAEIRQSLDATKGLTSVHVAVRTTGKVDSLLGITSADVDVRANPLAAKGVCTYNDEQGVPFRVQGDNISVKLFDDWSNLGSISELSTSRVLDPAAGVTQLLSGVTNLQAQGTEVIDGISTTKITGTIPASSVKMLDPGAKSARPATVWIAQDGSHHLVRASIDLGSGSIQLTQSKWNEPVNVD
2BYO Chain:A ((20-207))
---------------------------------------------SDPALLAEIRQSLDATKGLTSVHVAVRTTGKVDSLLGITSADVDVRANPLAAKGVCTYNDEQGVPFRVQGDNISVKLFDDWSNLGSISELSTSRV-----GVTQLLSGVTNLQAQGTEVIDGISTTKITGTIPASSVKMLDPGAKSARPATVWIAQDGSHHLVRASIDLGSGSIQLTQSKWNEPVNVD
General information:
TITO was launched using:
RESULT:
Template:
2BYO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62900 for 1344 contacts (-46.8/contact) +
2D Compatibility (PS) -20143 + (NN) -8879 + (LL) 2660
1D Compatibility (HY) -22000 + (ID) 9150
Total energy: -120412.0 ( -89.59 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_2BYO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BYO-query.scw
PDB file :
Tito_Scwrl_2BYO.pdb
: