Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSLLTTPLESVEGAVIWLLVGFSVVTWGLALVKGVQFARQKRQDRQFQKQFWSATSLDSAGEQAQDKQGAGA---RVAQAGFAAIQVQD----NGQPDLAQSINHQDRLERALRQQIQRERRS----LESGLAVLASIGSTSPFIGLFGTVWGIMEALKGISAAGSASLETVAGPIGSALIATGVGIAVAVPAVLVYNYFLRRLKLTAADLDDFAHDFYSLAQKSAFRVIVHPSAARQAGNPSRNVKEAS |
| 1VKR Chain:A ((394-457)) | --------------------------------------------------------------------GAGVLRKKIQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLTNFLDSGL---------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VKR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 4715 for 251 contacts (18.8/contact) +
2D Compatibility (PS) -5690 + (NN) -2119 + (LL) 14104
1D Compatibility (HY) -2800 + (ID) 1200
Total energy: 7010.0 ( 27.93 by residue)
QMean score : 0.220
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