Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSPPKIRRYIPADRDATLAIWLEASRVGHGFLGEAELQKQKALVRDHYLDASETWLALDG-DTPLGFIGLLDAFIGGLFVAPTAHGRGIGRQLVEHAATLKGALEVEVYAANREALGFYARCGFVESGRRPRDDEGRALEIVQLRREH
2KCW Chain:A ((4-142))
-----SIRRSRHEEGEELVAIWCRSVDATHDFLSAEYRTELEDLVRS-FLPEAPLWVAVNERDQPVGFMLLSGQHMDALFIDPDVRGCGVGRVLVEHALSMAPELTTNVNEQNEQAVGFYKKVGFKVTGRSEVDDLGKPYPLLNLAYVG
General information:
TITO was launched using:
RESULT:
Template:
2KCW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76119 for 1022 contacts (-74.5/contact) +
2D Compatibility (PS) -15754 + (NN) -13034 + (LL) -84
1D Compatibility (HY) -11200 + (ID) 2350
Total energy: -118541.0 ( -115.99 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_2KCW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KCW-query.scw
PDB file :
Tito_Scwrl_2KCW.pdb
: