Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGIPYSEPALLETRGGGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLGS
1ZWK Chain:A ((13-205))
---PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVST-----------EGALYATLEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGIP-------------TPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKL--
General information:
TITO was launched using:
RESULT:
Template:
1ZWK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104043 for 1472 contacts (-70.7/contact) +
2D Compatibility (PS) -18747 + (NN) -9876 + (LL) 952
1D Compatibility (HY) -22000 + (ID) 8450
Total energy: -162164.0 ( -110.17 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_1ZWK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZWK-query.scw
PDB file :
Tito_Scwrl_1ZWK.pdb
: