Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVAERLCATPCGPVIEFAGID-LSLGGSRILDGVRLRVEAGSVHALVGPNGGGKSSLVKTLLG-QMPHRGELRLEWPGAPGCIGYVPQALEFDRGLPLTVDDFMAAMCQRRPAF----LGLSRSRRPA--IDA---ALERVGMLAKRGRRM-GALSGGERQRVLLAQGLVPPPQLLVLDEPMSALDEG---GIQVFERLLLDWRQAGVTVLWIEHDLEAVGRLADRVSGLNRHLLFDGPAASSLTPERLL----TLFSTQPRKNAEASR
1Z47 Chain:A ((14-241))
--------------TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV---WIGGKRVTDLPPQ----KRNVGLVFQNY--ALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD--EMGVTSVFVTHDQEEALEVADRVL-----VLHEGNVEQFGTPEEVYEKPGTLF------------
General information:
TITO was launched using:
RESULT:
Template:
1Z47.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105964 for 1586 contacts (-66.8/contact) +
2D Compatibility (PS) -22939 + (NN) -16276 + (LL) 2996
1D Compatibility (HY) -15600 + (ID) 3850
Total energy: -161633.0 ( -101.91 by residue)
QMean score : 0.381
(partial model without unconserved sides chains):
PDB file :
Tito_1Z47.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z47-query.scw
PDB file :
Tito_Scwrl_1Z47.pdb
: