Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKKLFRKGILALAVSSVMGLSTHALADVVIGVAGPHTGANASFGEQYWRGASQAAEDINAAGGINGEKIKLVKADDACEPKQAVAVANRLVDQDKAIAVVGHFCSSSTIPASEVYDEAGIIAITPGSTNPQVTERGLSGMFRMCGRDDQQGVVAGDYIVNVLKAKKVAVIHDKDTYGQGLADATRAQLNKLGVKEVLYEGLTRGEKDFNALVTKIRASGAEVVYFGGLHPEAGPLVRQMREQGLTARFMSDDGVVTDELATTAGGPQYVKGVLMTFGADPRLIPDGKAVVEKFRAGGFEPEGYTLYSYASIQSLAAAFNGAGANDPAKAAEWLKSHPVQTVMGKKEWDKKGDLKVSDYVVYEWDDKGKYHQLP |
| 3IP5 Chain:A ((2-335)) | ---------------------------DVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFV-ADGVKFVVGHFNSGVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAKLVSGDGIVSNELASIAG--DAVEGTLNTFGPDPTLRPENKELVEKFKAAGFNPEAYTLYSYAAMQAIAGAAKAAGSVEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEW---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3IP5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -157071 for 3188 contacts (-49.3/contact) +
2D Compatibility (PS) -36687 + (NN) -13340 + (LL) 2232
1D Compatibility (HY) -25200 + (ID) 9350
Total energy: -239416.0 ( -75.10 by residue)
QMean score : 0.555
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