Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE
1R6M Chain:A ((1-239))
MNRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLK---QGWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGTAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE
General information:
TITO was launched using:
RESULT:
Template:
1R6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112025 for 1985 contacts (-56.4/contact) +
2D Compatibility (PS) -26014 + (NN) -15330 + (LL) -224
1D Compatibility (HY) -29200 + (ID) 11800
Total energy: -194593.0 ( -98.03 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_1R6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R6M-query.scw
PDB file :
Tito_Scwrl_1R6M.pdb
: