Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
2ODB Chain:A ((3-179))
-QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE-------------
General information:
TITO was launched using:
RESULT:
Template:
2ODB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126977 for 1435 contacts (-88.5/contact) +
2D Compatibility (PS) -19234 + (NN) -7407 + (LL) 792
1D Compatibility (HY) -26000 + (ID) 8850
Total energy: -187676.0 ( -130.78 by residue)
QMean score : 0.744
(partial model without unconserved sides chains):
PDB file :
Tito_2ODB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ODB-query.scw
PDB file :
Tito_Scwrl_2ODB.pdb
: