Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKSCLLL
1C1Y Chain:A ((1-167))
MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR-----------------
General information:
TITO was launched using:
RESULT:
Template:
1C1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101015 for 1349 contacts (-74.9/contact) +
2D Compatibility (PS) -17850 + (NN) -2363 + (LL) 1072
1D Compatibility (HY) -25600 + (ID) 8350
Total energy: -154106.0 ( -114.24 by residue)
QMean score : 0.696
(partial model without unconserved sides chains):
PDB file :
Tito_1C1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C1Y-query.scw
PDB file :
Tito_Scwrl_1C1Y.pdb
: