Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
4EPR Chain:A ((2-167))
MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4EPR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96297 for 1346 contacts (-71.5/contact) +
2D Compatibility (PS) -18492 + (NN) -9897 + (LL) 1972
1D Compatibility (HY) -22000 + (ID) 8000
Total energy: -152714.0 ( -113.46 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_4EPR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EPR-query.scw
PDB file :
Tito_Scwrl_4EPR.pdb
: