Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATRSPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
1HMP Chain:A ((4-217))
----SPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
General information:
TITO was launched using:
RESULT:
Template:
1HMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -171190 for 1656 contacts (-103.4/contact) +
2D Compatibility (PS) -24375 + (NN) -16046 + (LL) 504
1D Compatibility (HY) -34400 + (ID) 10700
Total energy: -256207.0 ( -154.71 by residue)
QMean score : 0.704
(partial model without unconserved sides chains):
PDB file :
Tito_1HMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HMP-query.scw
PDB file :
Tito_Scwrl_1HMP.pdb
: