Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENKIIDDNIIHASSIESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK
1AI9 Chain:A ((1-192))
MLKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYENEIIDDNIIHASSIESSLNLVSDVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLESWTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK
General information:
TITO was launched using:
RESULT:
Template:
1AI9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158509 for 1426 contacts (-111.2/contact) +
2D Compatibility (PS) -20683 + (NN) -6024 + (LL) 0
1D Compatibility (HY) -27600 + (ID) 9500
Total energy: -222316.0 ( -155.90 by residue)
QMean score : 0.744
(partial model without unconserved sides chains):
PDB file :
Tito_1AI9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AI9-query.scw
PDB file :
Tito_Scwrl_1AI9.pdb
: