Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL
1VJ3 Chain:A ((1-205))
-NQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL
General information:
TITO was launched using:
RESULT:
Template:
1VJ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148451 for 1527 contacts (-97.2/contact) +
2D Compatibility (PS) -22309 + (NN) -8785 + (LL) 208
1D Compatibility (HY) -30800 + (ID) 10250
Total energy: -220387.0 ( -144.33 by residue)
QMean score : 0.757
(partial model without unconserved sides chains):
PDB file :
Tito_1VJ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VJ3-query.scw
PDB file :
Tito_Scwrl_1VJ3.pdb
: