Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSELDYYEKFEEVHGILMYKDFVKYWDNVEAFQARPDDLVIATYPKSGTTWVSEIVYMIYKEGDVEKCKEDVIFNRIPFLECRKENLMNGVKQLDEMNSPRIVKTHLPPELLPASFWEKDCKIIYLCRNAKDVAVSFYYFFLMVAGHPNPGSFPEFVEKFMQGQVPYGSWYKHVKSWWEKGKSPRVLFLFYEDLKEDIRKEVIKLIHFLERKPSEELVDRIIHHTSFQEMKNNPSTNYTTLPDEIMNQKLSPFMRKGITGDWKNHFTVALNEKFDKHYEQQMKESTLKFRTEI
1HY3 Chain:A ((2-290))
-NSELDYYEKFEEVHGILMYKDFVKYWDNVEAFQARPDDLVIATYPKSGTTWVSEIVYMIYKEGDVEKCKEDVIFNRIPFLECRKENLMNGVKQLDEMNSPRIVKTHLPPELLPASFWEKDCKIIYLCRNAKDVAVSFYYFFLMVAGHPNPGSFPEFVEKFMQGQVPYGSWYKHVKSWWEKGKSPRVLFLFYEDLKEDIRKEVIKLIHFLERKPSEELVDRIIHHTSFQEMKNNPSTNYTTLPDEIMNQK--PFMRKGITGDWKNHFTEALNEKFDKHYEQQMKESTLKF----
General information:
TITO was launched using:
RESULT:
Template:
1HY3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175820 for 2318 contacts (-75.8/contact) +
2D Compatibility (PS) -30776 + (NN) -15894 + (LL) 816
1D Compatibility (HY) -44000 + (ID) 14300
Total energy: -279974.0 ( -120.78 by residue)
QMean score : 0.797
(partial model without unconserved sides chains):
PDB file :
Tito_1HY3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HY3-query.scw
PDB file :
Tito_Scwrl_1HY3.pdb
: