Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKLSVFFIFLFCSIATAAESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKKPSKPSN
1DD6 Chain:A ((4-219))
---------------------LPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNE---------
General information:
TITO was launched using:
RESULT:
Template:
1DD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99192 for 1908 contacts (-52.0/contact) +
2D Compatibility (PS) -23847 + (NN) -14697 + (LL) 2032
1D Compatibility (HY) -31200 + (ID) 10800
Total energy: -177704.0 ( -93.14 by residue)
QMean score : 0.740
(partial model without unconserved sides chains):
PDB file :
Tito_1DD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DD6-query.scw
PDB file :
Tito_Scwrl_1DD6.pdb
: