Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPPKRFCPSPSTSSEGTRIKKISIEGNIAAGKSTFVNILKQASEDWEVVPEPVARWCNVQSTQEEFEELTTSQKSGGNVLQMMYEKPERWSFTFQSYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESDCMNETEWTIYQDWHDWMNSQFGQSLELDGIIYLRATPEKCLNRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTSFDYLQEVPVLTLDVNEDFKDKHESLVEKVKEFLSTL
1P5Z Chain:B ((23-263))
-------------------RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQST------------NGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
1P5Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99682 for 1749 contacts (-57.0/contact) +
2D Compatibility (PS) -24162 + (NN) -6855 + (LL) 1224
1D Compatibility (HY) -34400 + (ID) 10850
Total energy: -174725.0 ( -99.90 by residue)
QMean score : 0.656
(partial model without unconserved sides chains):
PDB file :
Tito_1P5Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1P5Z-query.scw
PDB file :
Tito_Scwrl_1P5Z.pdb
: