Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDLPVNLTSFSLSTPSPLETNHSLGKDDLRPSSPLLSVFGVLILTLLGFLVAATFAWNLLVLATILRVRTFHRVPHNLVASMAVSDVLVAALVMPLSLVHELSGRRWQLGRRLCQLWIACDVLCCTASIWNVTAIALDRYWSITRHMEYTLRTRKCVSNVMIALTWALSAVISLAPLLFGWGETYSEGSEECQVSREPS-YAVFSTVGAFYLPLCVVLFVYWKIYKAAKFRVGSRKTN--SVSPISEAVEVKDSAKQPQMVFT-VRHATVTFQ--------------PEGDTWR-----------------------------EQ---------------KEQRAALMVGILIGVFVLCWIPFFLTELISPLCSCDIPAIWKSI-----FLWLGYSNSFFNPLIYTAFNKNYNSAFKNFFSRQH |
| 4IAR Chain:A ((21-394)) | ----------------------------------------VLLVMLLALITLATTLSNAFVIATVYRTRKLHTPANYLIASLAVTDLLVSILVMPISTMYTVTGR-WTLGQVVCDFWLSSDITCCTASIWHLCVIALDRYWAITDAVEYSAKRTPKRAAVMIALVWVFSISISLPP--FFWRQA-----SECVVNTDHILYTVYSTVGAFYFPTLLLIALYGRIYVEARSRIADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLAARERKATKTLGIILGAFIVCWLPFFIISLVMPI--------WFHLAIFDFFTWLGYLNSLINPIIYTMSNEDFKQAFHKLIRFK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4IAR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -229693 for 2070 contacts (-111.0/contact) +
2D Compatibility (PS) -30632 + (NN) -11401 + (LL) 2048
1D Compatibility (HY) -33600 + (ID) 6300
Total energy: -309578.0 ( -149.55 by residue)
QMean score : 0.350
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