Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | METNSSLPTNISGGTPAVSAGYLFLDIITYLVFAVTFVLGVLGNGLVIWV-AGFRMTHTVTTISYLNLAVADFCFTSTLPFFMVRKAMGGHWPFGWFLCKFVFTIVDINLFGSVFLIALIALDRCVCVLHPVWTQNHRTVSLAKKVIIGPWVMALLLTLPVIIRVTTVPGKTGTVACTFNFSPWTNDPKERINVAVAMLTVRGIIRFIIGFSAPMSIVAVSYGLIATKIHKQGLIKSS--------RPLRVLSFVAAAFFLCWSPYQVVALI-ATVRIRE-LLQGMYKEIGIAVDVTSALAFFNSCLNPMLYVFMGQDFRERLIHALPASLERALTEDSTQTSDTATNSTLPSAEVELQAK |
| 5C1M Chain:A ((23-294)) | -------------------------------LYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSVNYLMGT-WPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATT-KYRQGSIDCTLTFSHPTWYWENLLKICV----------FIFAFIMPVLIITVCYGLMILRLKSVRMLSGSKEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCI------ALGYTNSCLNPVLYAFLDENFKRCF-------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 5C1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -242540 for 1930 contacts (-125.7/contact) +
2D Compatibility (PS) -26354 + (NN) -3891 + (LL) 6140
1D Compatibility (HY) -33200 + (ID) 4850
Total energy: -304695.0 ( -157.87 by residue)
QMean score : 0.320
|
|
|