Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MITLNNQDQPVPFNSSHPDEYKIAALVFYSCIFIIGLFVNITALWVFSCTTKKRTTVTIYMMNVALVDLIFIMTLPFRMFYY-AKDEWPFGEYFCQILGALTVFYPSI--ALWLLAFISADRYMAIVQPKYAKELKNTCKAVLACVGVWIMTLTTTTPLLLLYKDPDKDSTPATCLKISDIIYLKAVNVLNLTRLTFFFLIPLFIMIGCYLVIIHNLLH-----------------------------------------GRT--SKLKPKVKEKSIRIIITLLVQVLVCFMPFHICFAF-----------LMLGTGENSYNPWGAFTTFLMNLSTCLDVILYYIVSKQFQARVISVMLYRNYLRSMRRKSFRSGSLRSLSNINSEML |
4XNV Chain:A ((57-382)) | ----------------------------YILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFGDAMCKL--QRFIFHVNLYGSILFLTCISAHRYSGVVYPKSLGRLKKK-NAICISVLVWLIVVVAISPILFYSGTGVRKNKTITCYDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATY-QVTRGLASLNSCVNPILYFLAGDTFRRR----------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -245797 for 1936 contacts (-127.0/contact) +
2D Compatibility (PS) -26664 + (NN) -3412 + (LL) 4264
1D Compatibility (HY) -35600 + (ID) 3900
Total energy: -311109.0 ( -160.70 by residue)
QMean score : 0.262
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