Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MANYSHAADNILQNLSPLTAFLKLTSLGFIIGVSVVGNLLISILLVKDKTLHRAPYYFLLDLCCSDILRSAICFPFVFNSVKNGSTWTYGTLTCKVIAFLGVLSCFHTAFMLFCISVTRYLAIAHHRFYTKRLTFWTCLAVICMVWTLSVAMAFPPVLDVGTYSFIREEDQ-----------CTF-QHRSFRANDSLGFMLLLALILLATQLVYLKLIFFVHDRRKMKPVQFVAAVSQNWTFHGPGASGQAAANWLAGFGRGPTPPTLLGIRQNANTTGRRRLLVLDEFKMEKRISRMFYIMTFLFLTLWGPYLVACYWRVFARGPVVPGGFLTAAVWMSFAQAGINPFVCIFSNRELRRCFSTTLLYCRKSRLPREPYCVI |
| 4BVN Chain:A ((18-300)) | --------------------------MALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG-TWLWGSFLCELWTSLDVLCVTASVETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIM----MHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLI-----MIFVALRVYREAKEQIR----------------------------------------------KRKTSR--VMLMREHKALKTLG----IIMGVFTLCWLPFFLVNIVNVFNRD-LVPKWLFVAFNWLGYANSAMNPII-LCRSPDFRKAFKRLLA--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BVN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -281768 for 2009 contacts (-140.3/contact) +
2D Compatibility (PS) -26873 + (NN) -7791 + (LL) 5900
1D Compatibility (HY) -29600 + (ID) 3400
Total energy: -343532.0 ( -171.00 by residue)
QMean score : 0.325
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