Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNSSFHLHFLDLNLNATEGNLSGPNVKNKSSPCEDMGIAVEVFLTLGVISLLENILVIGAIVKNKNLHSPMYFFVCSLAVADMLVSMSSAWETITIYLLNNKHLVIADAFVRHIDNVFDS----------MICISVVASMCSLLAIAVDRYVTIFYALRYHHIMTARRSGAIIAGIW------------------------AFCTGC--GIVFILYSESTYVILCLISMFFA----MLFLLVSLYIHMFLLARTHVKRIAALPGASSARQRTSMQ----GAVTVTMLLGVFTVCWAPFFLHLTLMLSCPQNLYCSRFMSHFNMYLILIM--CNSVMDPLIYAFRSQEMRKTFKEIICCRGFRIACSFPRRD |
2YDO Chain:A ((6-303)) | -----------------------------------SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVG------------------VLAIPFAIAISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMES-----------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWL----MYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAA |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -295368 for 1763 contacts (-167.5/contact) +
2D Compatibility (PS) -25066 + (NN) -11099 + (LL) 2996
1D Compatibility (HY) -31600 + (ID) 4350
Total energy: -364487.0 ( -206.74 by residue)
QMean score : 0.410
|
|
|