Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAVQGSQRRLLGSLNSTPTAIPQLGLAANQTGARCLEVSISDGLFLSLGLVSLV---ENALVVATIAKNRNLHSPMYCFICCLALSDLLVSGSNVLETAVILLLEAGA-LVARAAVLQ-----QLDNVIDVITCSSMLSSLCFLGAIAVDRYISIFYALRYHSIVTLPRARRAVAAIWVASVVFSTLFIA--------------YYDH----------VAVLLCLVVFFLAMLVLMAVLYVHMLARACQHAQGIARLHKRQRPVHQGFGLKGAVTLTILLGIFFLCWGPFFLHLTLIVLCPEHPTCGCIFKNFNLFLALIICNAIIDPLIYAFHSQELRRTLKEVLTCSW |
2VT4 Chain:A ((10-297)) | ---------------------------------------WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVG---------LLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLC---VIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVA-LRVYREAKEQIR----------------EHKALKTLGIIMGVFTLCWLPFFL-VNIVNVFNRDLVPDWLFVAFNW---LGYANSAMNPIIYC-RSPDFRKAFKRLLA--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VT4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -268929 for 1725 contacts (-155.9/contact) +
2D Compatibility (PS) -24900 + (NN) -14609 + (LL) 5000
1D Compatibility (HY) -29600 + (ID) 3950
Total energy: -336988.0 ( -195.36 by residue)
QMean score : 0.283
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