Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEVSLNHPASNTTSTKNNNSAFFYFESCQPPSPALLLLCIAYTVVLIVGLFGNLSLIIIIFKKQRKAQNFTSILIANLSLSDTLVCVMCIHFTIIYTLMDHWIFGDTMCRLTSYVQSVSISVSIFSLVFTAVERYQLIVNPRGWKPSVTHAYWGITLIWLFSLLLSIPFFLSYHLTDEPFRNLSLPTDLYTHQVACVENWPSKKDRLLFTTSLFLLQYFVPLGFILICYLKIVICLRRRNAKVDKKKENEGRLNENKRINTMLISIVVTFGACWLPRISSMSSLTGIMRC
4S0V Chain:A ((56-252))
------------------------------PKEYEWVLIAGYIIVFVVALIGNVLVCVAVWKNHH-MRTVTNYFIVNLSLADVLVTITCLPATLVVDITETWFFGQSLCKVIPYLQTVSVSVSVLTLSCIALDRWYAICHP----STAKRARNSIVIIWIVSCIIMIPQAIVMECST-VF-----KTTLFT---VCDERWGGEIYPKMYHICFFLVTYMAPLCLMVLAYLQIFRKLWCRQGIDCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDV
General information:
TITO was launched using:
RESULT:
Template:
4S0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154815 for 1255 contacts (-123.4/contact) +
2D Compatibility (PS) -18983 + (NN) -4838 + (LL) 2196
1D Compatibility (HY) -27200 + (ID) 2900
Total energy: -206540.0 ( -164.57 by residue)
QMean score : 0.206
(partial model without unconserved sides chains):
PDB file :
Tito_4S0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4S0V-query.scw
PDB file :
Tito_Scwrl_4S0V.pdb
: