Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTAAIRRQRELSILPKVTLEAMNTTVMQGFNRSERCPRDTRIVQLVFPALYTVVFLTGILLNTLALWVFVHIPSSSTFIIYLKNTLVADLIMTLMLPFKILSDSHLAPWQLRAFVCRFSSVIFYETMYVGIVLLGLIAFDRFLKIIRPLRNIFLKKPVFAKTVSIFIWFFLFFISLPNTILSNKEATPSSVKKCASLKGPLGLKWHQMVNNICQFIFWTVFILMLVFYVVIAKKVYDSYRKSKSKDRKNNKKLEGKVFVVVAVFFVCFAPFHFARVPYTHSQTNNKTDCRLQNQLFIAKETTLFLAATNICMDPLIYIFLCKKFTEKLPCMQGRKTTASSQENHSSQTDNITLG |
| 4NTJ Chain:A ((26-238)) | -----------------------------------CTRDYKITQVLFPLLYTVLFFVGLITNGLAMRIFFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAKL----LRTFVCQVTSVIFYFTMYISISFLGLITIDRYQKTTRPFKT---KNLLGAKILSVVIWAFMFLLSLPNMIL----------------KSEFGLVWHEIVNYICQVIFWINFLIVIVCYTLITKELYRSY--VRTADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLRGVGKVRKKVNVKV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NTJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -138639 for 1167 contacts (-118.8/contact) +
2D Compatibility (PS) -19484 + (NN) -10238 + (LL) 4988
1D Compatibility (HY) -32400 + (ID) 4950
Total energy: -200723.0 ( -172.00 by residue)
QMean score : 0.257
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