Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSCNAQLSTLNVCGEFVVPGADRTNPSAECCNALEAVPNECLCNTF-----R-I------ASRLPSRCNIPTLSCS
2RKN Chain:A ((3-72))
DLCGMSQDELNECKPAVSKENP-TSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLA-----
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28118 for 359 contacts (-78.3/contact) +
2D Compatibility (PS) -6104 + (NN) -4828 + (LL) 328
1D Compatibility (HY) -3200 + (ID) 1000
Total energy: -42922.0 ( -119.56 by residue)
QMean score : 0.372
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: