Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QVTLCGMTKEGFASCKPSVQTGVNPLPPSYSCCSALEKADLSCLCFFKKNYPKMLTDNNIDPNLAMQLPAKCNMAGSFSCK
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAV-SKENPTSPSQPCCTALQHADFACLCGYKNS--PWLGSFGVDPELASALPKQCGLANAPTC-
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42792 for 531 contacts (-80.6/contact) +
2D Compatibility (PS) -8047 + (NN) -4594 + (LL) 136
1D Compatibility (HY) -6800 + (ID) 1600
Total energy: -63697.0 ( -119.96 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: