Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-QSDCTNVLISMSPCLNYITG-NSSTPSSQCCTQLASVVRSSPQCLCQVLNGGGSSLGIEVNKTQAIALPGACNVQTPPISSCN
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA---DFACLCGYKNS-PWLGSFGVDPELASALPKQCGLANAP--TC-
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28878 for 520 contacts (-55.5/contact) +
2D Compatibility (PS) -8053 + (NN) -2752 + (LL) 188
1D Compatibility (HY) -3200 + (ID) 1050
Total energy: -43745.0 ( -84.12 by residue)
QMean score : 0.196
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: