Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
EMAHGVCNLSSAGIRACQPAAAIRNPTDQPSSECCAALAGADLACLCRYKNAAGVWVRFYRIDINRAMGLPGKCGLAMPANC
2RKN Chain:A ((1-77))
--AIDLCGMSQDELNECKPAVSKENPT-SPSQPCCTALQHADFACLCGYKN--SPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47339 for 531 contacts (-89.2/contact) +
2D Compatibility (PS) -8349 + (NN) -4405 + (LL) 524
1D Compatibility (HY) -6000 + (ID) 1700
Total energy: -67269.0 ( -126.68 by residue)
QMean score : 0.315
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: