Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQTCAGQLRGLAPCLRYSVPPLPGQVPPAPGPECCSALGAVSRDCACGTF------SI------INSLPAKCALPPVSCQ
2RKN Chain:A ((2-72))
IDLCGMSQDELNECKPAVSKENP----TSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLA-----
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30812 for 364 contacts (-84.6/contact) +
2D Compatibility (PS) -5948 + (NN) -4439 + (LL) 200
1D Compatibility (HY) -1600 + (ID) 850
Total energy: -43449.0 ( -119.37 by residue)
QMean score : 0.286
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: