Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AQTCSASLANLNACAPFVVLGAATTPSSDCCTALQSVDHECLCNTL------RI------ASRVPAQCNLPPLSCGAN
2RKN Chain:A ((3-72))
-DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLA-------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34743 for 358 contacts (-97.0/contact) +
2D Compatibility (PS) -5913 + (NN) -2326 + (LL) 100
1D Compatibility (HY) -3200 + (ID) 1300
Total energy: -47382.0 ( -132.35 by residue)
QMean score : 0.337
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: