Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPQQSCTASLTGLNVCAPFLV-PGSPTASTECCNAVQSINHDCMCN------------TMRIAAQIPAQCNLP-PLSCSAN
2RKN Chain:A ((1-77))
-AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC---
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48782 for 412 contacts (-118.4/contact) +
2D Compatibility (PS) -6623 + (NN) -5626 + (LL) 156
1D Compatibility (HY) -3200 + (ID) 950
Total energy: -65025.0 ( -157.83 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: