Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPSACSTQLNNLSVCAPFVVPGAPDSTPSADCCTALQTIDDACMCSTL-----R-I------ASRLPSHCNLTPVTCDVNA
2RKN Chain:A ((2-72))
-IDLCGMSQDELNECKPAVSKENP-TSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLA--------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37310 for 365 contacts (-102.2/contact) +
2D Compatibility (PS) -6183 + (NN) -5411 + (LL) 384
1D Compatibility (HY) -3200 + (ID) 1200
Total energy: -52920.0 ( -144.99 by residue)
QMean score : 0.363
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: