Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--QQCTSQLNNLNVCAPFVVPGAANTNPNAECCNALEAVQHDCLCS------------TLQISSRLPSQCNLP-PLTCGN
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAV-SKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC--
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30967 for 410 contacts (-75.5/contact) +
2D Compatibility (PS) -6482 + (NN) -6045 + (LL) -60
1D Compatibility (HY) -3600 + (ID) 1150
Total energy: -48304.0 ( -117.81 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: