Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSADCAATAESLSPCASAVGNNP-QDPTPECCAVLQTANVDCICALVQ------------STMQLPSECGLETP-QCPSD
2RKN Chain:A ((2-77))
-IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC---
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33891 for 386 contacts (-87.8/contact) +
2D Compatibility (PS) -6404 + (NN) -4864 + (LL) -124
1D Compatibility (HY) -5200 + (ID) 950
Total energy: -51433.0 ( -133.25 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: