Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QECGNDLSNVQVCAAMVLPGSG-RPNSECCAALQSTNRDCLCNALR------------AATSLPSLCNLPPVDCGINT
2RKN Chain:A ((3-72))
DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLA--------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23746 for 356 contacts (-66.7/contact) +
2D Compatibility (PS) -6159 + (NN) -4443 + (LL) 36
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -38012.0 ( -106.78 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: