Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSADCAATAELLSPCASAVGNNP-QDPTPECCAVLQTADVDCICALVE------------STIKLPSECGLDTP-QCPSD
2RKN Chain:A ((2-77))
-IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC---
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37343 for 386 contacts (-96.7/contact) +
2D Compatibility (PS) -6488 + (NN) -6374 + (LL) -124
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: -56129.0 ( -145.41 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: