Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGACGKTSPDQEAMKLAPCAMAAQDAK-AAVSDSCCAQVRSIGQNPSCLCSVMLSDMAKASGIKAEIAITIPKRCNIANRPVGYKCGDYTLP
2RKN Chain:A ((2-75))
-----IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--DFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP-----------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23508 for 490 contacts (-48.0/contact) +
2D Compatibility (PS) -7362 + (NN) -2095 + (LL) 112
1D Compatibility (HY) -3200 + (ID) 950
Total energy: -37003.0 ( -75.52 by residue)
QMean score : 0.173
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: