Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-AGECGKTPIRSAAASLSPCLGAA-GNARAAVPPACCSKVTALIKTAPKCLCAVLLSPLAKQAGIKPGIAITIPKRCSIKNRQAGKKCGKYTLP
2RKN Chain:A ((1-77))
AIDLCG-----MSQDELNECKPAVSKENPTSPSQPCCTALQ---HADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAP---TC------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27281 for 512 contacts (-53.3/contact) +
2D Compatibility (PS) -7334 + (NN) 552 + (LL) 912
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: -38951.0 ( -76.08 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: