Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QINTPCSPSMLSTFTPCINFLRNSTANGTSPTADCCKSLQTLTSGGRDCLCLIVTGSVPFQIPINRTLAISLPRACNMPGVPVQCKV
2RKN Chain:A ((1-77))
-AIDLCGMS-QDELNECKPAVSKE--NPTSPSQPCCTALQHAD---FACLCGYKNSPWLGSFGVDPELASALPKQCGLA-NAPTC--
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50914 for 531 contacts (-95.9/contact) +
2D Compatibility (PS) -8081 + (NN) -4264 + (LL) 236
1D Compatibility (HY) -3200 + (ID) 1000
Total energy: -67223.0 ( -126.60 by residue)
QMean score : 0.315
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: