Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAQCGGRNLSILAPCLPAAKANVQPSAACCRALSSFAT--NTG----EDCLCAAASSQQQSGAKVEFAKYIPQKCQLTYK----AGIVCNGVVIPGGQ
1SIY Chain:A ((3-89))
---CGQV-QGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNS-------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38545 for 523 contacts (-73.7/contact) +
2D Compatibility (PS) -8019 + (NN) -3862 + (LL) 528
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -53198.0 ( -101.72 by residue)
QMean score : 0.347
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: