Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-DTTCDNNINGILSNCKST-------NPSPACCSFMRKITLECVCPRITSDVTKY--ISLSSILTIAKICHRTLPHQYQCGSYLLP
2RKN Chain:A ((1-77))
AIDLCGMSQDE-LNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANA--PTC------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43200 for 434 contacts (-99.5/contact) +
2D Compatibility (PS) -6660 + (NN) -1111 + (LL) 472
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -52799.0 ( -121.66 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: