Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-QSGCTTVLIGMAPCLNYITGS-SSSPSSSCCSQLASVVQSQPRCLCVALNGGGAALGITINRTLALALPGACNVQTPPVSQCDAA
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA---DFACLCGYKNS-PWLGSFGVDPELASALPKQCGLANAP--TC---
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48665 for 519 contacts (-93.8/contact) +
2D Compatibility (PS) -7901 + (NN) -2436 + (LL) 488
1D Compatibility (HY) -2800 + (ID) 1000
Total energy: -62314.0 ( -120.07 by residue)
QMean score : 0.184
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: