Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDRLKKIHWLLVTNVIALFCIGIVVQYSSAGGKWAPFAIHQLVIFSFFFLLAIAMSFIELDFYLKHAYFFYIAAVISLLVVNFFGLYTMGATRWIRIGPISLQPSEFAKVGLILALARYFNKQSVYKMMEFQRLLKALIFIFLPVFLVLKQPNLGTAVIMLFIGASIIFTAIIKRAHLIIY-GIISILVIPAIWPSLRSYHKQRILSFLDSSVDPLGIGYNAQQSQIAIGSGGLFGKSFVSGSQTQLGFLPEKHTDFAFAVLSEEWGFLGSMTLIVLYTTLLAIIFSIAYRSKNYFSKLVSIGIFAFFGVHFFINIGMTIGLLPVIGDPLPFLSYGGSTTAASSICIGLLLSSVASMKDLKLKLSISSIERPVV |
4KPN Chain:A ((46-120)) | ------------------------------------------------------------------------------------------------------------------------------------------------IFFALKSPELDVIALTTIYGNVRTPTATVNALHLLEFAGREDIPVSEGFRTSLRGELKERIADFV-HGADGLGNTYPTLSDRKPIDTFAPDYLIQKVNEFPGEITIVALGPLTNLAAAVECDPTFAKKVGQIIILGGAFQVNGNVNPAAEANIYGDPEAADIIFTCGADILVVGINITHQVYWTGKDLEDLGRSDSKFGKYLYAASHFYATYHREAYDIDAIYLHDPATM |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KPN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -61242 for 417 contacts (-146.9/contact) +
2D Compatibility (PS) -7920 + (NN) -3366 + (LL) 14928
1D Compatibility (HY) -1200 + (ID) 1200
Total energy: -60000.0 ( -143.88 by residue)
QMean score : 0.053
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