Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGEKKLKAAVVLSGCGHLDGAEVREVVLSLLVLDQQEVEVKCFAPDINITQVVNHKTTEAVKEKRNVLVEAARVARSEICDLKEAKAEDFDMLVVPGGYGVAKNLSDLA-EDKEVVTVIPEFERLVSEFFATKKPIGAICISPAIIVSILSSKTSKGESKIKVTIGDDREKLIEKLGGEHIKCDTGLSIEDEEHNVFSCSAYMRRDESTYSVYQGIKHMIDSMVKKTNKRI
3L3B Chain:A ((3-216))
-----LNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDED--NDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL-----KDIAKVKVTIGE----LIDKMGGVHVDCPTIKSVKDDVNRIFSCSAYMRND-SLYNVYLGIQDMISSMVNYL----
General information:
TITO was launched using:
RESULT:
Template:
3L3B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -189382 for 1899 contacts (-99.7/contact) +
2D Compatibility (PS) -21280 + (NN) 858 + (LL) 864
1D Compatibility (HY) -25600 + (ID) 5900
Total energy: -240440.0 ( -126.61 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_3L3B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L3B-query.scw
PDB file :
Tito_Scwrl_3L3B.pdb
: