Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVIVLKLPEVTVNWSYPVLNFDLSFRIILISFLSVAFLIVLPAKNFSFSEMLSFFAYTISSLCAILSKQIISVIIFCELMAISASFIIAAGCKDNGPAIRYACVHFFVGIILTAGLAIQNPNLIIMGLLIICACFPFSFWVVDAYPAASLHGASYLSLFTTKISF--LIALLHTYNLWQDHAEILAFLGTITAIYGIIFTSL----EQNIRRFLAYNVVGQMGILIM------TGSLLSHSKNAIPLLILNIIFSIVYQLLLTAVANSIILRTKAVN-FNRVGKFMSAEGIYALIAI--LTMAAFPGTAGFISKSYI-AVEIKMNGTNLELYKNLHKILNLSLYLSVGLKFLYYIFITKSRSKLLAEKGGGVAMIILASICVIAGNPYLPIYNKPSIFNLAYNTKNIWSQLNLLLCVTLLFIPLRKLFLPRINLKMDIDWIFRALIPYVVSLFNKLIFKMRKISAGALQNLTNSLTNLYFNNANKLKEALSYDSVSFISASSLFLMSILLVLLCLNH |
| 3RKO Chain:N ((208-406)) | -------------------------------------------------------------------------------------------------------------------------GLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTFLAT-ASKIAIFGVVMRLFLYAPVGDSEAIRVVL-AIIAFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEM---SMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLWWLVGAVVVGSAIGLYYYLRVAVSLYLHAPEQPSNWQYSAGGIVVLISALLVLVLGVWPQPLISIVRLAMPLM---------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158807 for 1351 contacts (-117.5/contact) +
2D Compatibility (PS) -19049 + (NN) -4054 + (LL) 21288
1D Compatibility (HY) -19600 + (ID) 2700
Total energy: -182922.0 ( -135.40 by residue)
QMean score : 0.158
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